Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs13203885 chr6:111995127 C/T 1.71E-5 111 2.03 10.17 19.23 KM Plot
LAML rs13218061 chr6:127653758 G/A 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs13302945 chr1:889159 A/C 0.000178 109 0 15.67 14.22 KM Plot
LAML rs13303056 chr1:889158 G/C 0.000178 109 0 15.67 14.22 KM Plot
LAML rs13303227 chr1:892745 G/A 0.000158 110 0 16.17 14.22 KM Plot
LAML rs13324142 chr3:48669447 C/T 0.000106 111 15.73 11.68 0 KM Plot
LAML rs13344044 chr19:12552352 C/T 1.87E-5 111 6.13 22.37 13.1 KM Plot
LAML rs13407083 chr2:3146201 G/A 8.16E-5 110 15.23 14.7 0 KM Plot
LAML rs13411818 chr2:177581333 A/G 1.21E-5 111 0 9.63 16.2 KM Plot
LAML rs13417303 chr2:1950897 C/T 0.00015 111 15.7 12.65 0 KM Plot
LAML rs13427200 chr2:3225462 T/C 6.74E-5 110 0 14.7 15.23 KM Plot
LAML rs13427214 chr2:3225516 T/C 0.000101 110 0 13.1 15.2 KM Plot
LAML rs13428521 chr2:3138645 C/T 0.000117 109 16.17 8.17 0 KM Plot
LAML rs13429922 chr2:30648108 T/A 0.000152 108 13.1 26.4 0 KM Plot
LAML rs13432348 chr2:3139918 C/T 0.000117 109 16.17 8.17 0 KM Plot